Fit for gene/exon XXX threw the next warning(s): restarting interrupted p

[frymor]

Hi,

I am running DEXseq on R 3.3 and get the following warning:

Fit for gene/exon ***** threw the next warning(s): restarting interrupted promise evaluation

for multiple (if not all) genes.

When I run the same script on an iMac, It runs with no warnings.

the two SessionInfo() are below.

any ideas, why this happening?
Is it safe to ignore (as it is "only" a warning)?

thanks
Assa
##### Ubuntu

> sessionInfo()

R version 3.3.0 (2016-05-03)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.4 LTS
locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       


attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] readr_0.2.2                DEXSeq_1.18.4             
 [3] RColorBrewer_1.1-2         AnnotationDbi_1.34.3      
 [5] DESeq2_1.12.3              SummarizedExperiment_1.2.3
 [7] GenomicRanges_1.24.2       GenomeInfoDb_1.8.1        
 [9] IRanges_2.6.1              S4Vectors_0.10.1          
[11] Biobase_2.32.0             BiocGenerics_0.18.0       
[13] BiocParallel_1.6.2        

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.5         plyr_1.8.4          XVector_0.12.0     
 [4] bitops_1.0-6        tools_3.3.0         zlibbioc_1.18.0    
 [7] biomaRt_2.28.0      statmod_1.4.24      rpart_4.1-10       
[10] annotate_1.50.0     RSQLite_1.0.0       gtable_0.2.0       
[13] lattice_0.20-33     Matrix_1.2-6        DBI_0.4-1          
[16] gridExtra_2.2.1     stringr_1.0.0       hwriter_1.3.2      
[19] genefilter_1.54.2   cluster_2.0.4       Biostrings_2.40.2  
[22] locfit_1.5-9.1      grid_3.3.0          nnet_7.3-12        
[25] data.table_1.9.6    XML_3.98-1.4        survival_2.39-4    
[28] foreign_0.8-66      latticeExtra_0.6-28 Formula_1.2-1      
[31] magrittr_1.5        geneplotter_1.50.0  ggplot2_2.1.0      
[34] Rsamtools_1.24.0    Hmisc_3.17-4        scales_0.4.0       
[37] splines_3.3.0       colorspace_1.2-6    xtable_1.8-2       
[40] stringi_1.1.1       acepack_1.3-3.3     RCurl_1.95-4.8     
[43] munsell_0.4.3       chron_2.3-47

##### on the iMac #####

> sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.5 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] readr_0.2.2                DEXSeq_1.16.10             DESeq2_1.10.1              RcppArmadillo_0.6.700.3.0 
 [5] Rcpp_0.12.5                SummarizedExperiment_1.0.2 GenomicRanges_1.22.4       GenomeInfoDb_1.6.3        
 [9] IRanges_2.4.8              S4Vectors_0.8.11           Biobase_2.30.0             BiocGenerics_0.16.1       
[13] BiocParallel_1.4.3        

loaded via a namespace (and not attached):
 [1] genefilter_1.52.1    statmod_1.4.24       locfit_1.5-9.1       splines_3.2.3        lattice_0.20-33     
 [6] colorspace_1.2-6     survival_2.39-2      XML_3.98-1.4         foreign_0.8-66       DBI_0.3.1           
[11] RColorBrewer_1.1-2   lambda.r_1.1.7       plyr_1.8.3           stringr_1.0.0        zlibbioc_1.16.0     
[16] Biostrings_2.38.4    munsell_0.4.3        gtable_0.2.0         futile.logger_1.4.1  hwriter_1.3.2       
[21] latticeExtra_0.6-28  geneplotter_1.48.0   biomaRt_2.26.1       AnnotationDbi_1.32.3 acepack_1.3-3.3     
[26] xtable_1.8-2         scales_0.4.0         Hmisc_3.17-3         annotate_1.48.0      XVector_0.10.0      
[31] Rsamtools_1.22.0     gridExtra_2.2.1      ggplot2_2.1.0        stringi_1.0-1        grid_3.2.3          
[36] tools_3.2.3          bitops_1.0-6         magrittr_1.5         RCurl_1.95-4.8       RSQLite_1.0.0       
[41] Formula_1.2-1        cluster_2.0.4        futile.options_1.0.0 Matrix_1.2-5         rpart_4.1-10        
[46] nnet_7.3-12

[frymor]

I have solved the problem. no need of further info.