I have to run GATK's Base Quality Score Recalibration for the organism Mycobacterium Tuberculosis. One of the input files is a dbsnp file for this bacteria. I am unable to get this file in a vcf format as required by the GATK's reclibration program. Is there a way I can convert the snp data from - http://www.ncbi.nlm.nih.gov/snp into a vcf file format for mycobacterium tuberculosis?
Appreciate the help.
Appreciate the help.
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