Hi,
I'm attempting to build the new pipeline on a mac and it is failing with the errors listed below. Has anyone had any luck figuring out the modifications needed to get it to build?
thanks
charlie
-- Build files have been written to: /Users/charliew/GAPipeline-1.4.0/build
make --directory build
[ 0%] Building CXX object c++/common/CMakeFiles/ga_common.dir/Alignment.cpp.o
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: 'uint' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: template argument 1 is invalid
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: template argument 2 is invalid
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp: In function 'Target boost::lexical_cast(const Source&) [with Target = ga::common::Match::NonMatchReason, Source = std::string]':
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:42: error: 'uint' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:42: error: expected `;' before 'num_exact'
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_exact' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_single' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_double' was not declared in this scope
make[3]: *** [c++/common/CMakeFiles/ga_common.dir/Alignment.cpp.o] Error 1
make[2]: *** [c++/common/CMakeFiles/ga_common.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [all] Error 2
I'm attempting to build the new pipeline on a mac and it is failing with the errors listed below. Has anyone had any luck figuring out the modifications needed to get it to build?
thanks
charlie
-- Build files have been written to: /Users/charliew/GAPipeline-1.4.0/build
make --directory build
[ 0%] Building CXX object c++/common/CMakeFiles/ga_common.dir/Alignment.cpp.o
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: 'uint' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: template argument 1 is invalid
/Users/charliew/GAPipeline-1.4.0/c++/common/Sequence.hh:60: error: template argument 2 is invalid
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp: In function 'Target boost::lexical_cast(const Source&) [with Target = ga::common::Match::NonMatchReason, Source = std::string]':
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:42: error: 'uint' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:42: error: expected `;' before 'num_exact'
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_exact' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_single' was not declared in this scope
/Users/charliew/GAPipeline-1.4.0/c++/common/Alignment.cpp:44: error: 'num_double' was not declared in this scope
make[3]: *** [c++/common/CMakeFiles/ga_common.dir/Alignment.cpp.o] Error 1
make[2]: *** [c++/common/CMakeFiles/ga_common.dir/all] Error 2
make[1]: *** [all] Error 2
make: *** [all] Error 2
Comment