I want to use the new cuffquant and cuffnorm features of cufflinks 2.2.0, so I removed my 2.1.1 version of cufflinks and downloaded the source code for version 2.2.0. However, after installation, I go to the install directory and type cuffquant to run the program, but I get the following message:
cuffquant: command not found
This happens even though I can see the cuffquant module is there. If I try and run cufflinks, or one of the other modules that was available in the old version, it runs fine, but the version is listed as 2.1.1. I'm working on a linux, so I tried downloading the binaries, and I have the same issue. Has anyone else has this problem? It seems to me that there is something wrong with the release, but I have not received a response back from the cufflinks authors or the google group forum. Thanks for looking.
cuffquant: command not found
This happens even though I can see the cuffquant module is there. If I try and run cufflinks, or one of the other modules that was available in the old version, it runs fine, but the version is listed as 2.1.1. I'm working on a linux, so I tried downloading the binaries, and I have the same issue. Has anyone else has this problem? It seems to me that there is something wrong with the release, but I have not received a response back from the cufflinks authors or the google group forum. Thanks for looking.
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