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Old 04-08-2011, 01:59 PM   #1
xuguorong
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Location: US

Join Date: Feb 2010
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Default SAMMate 2.5 - Transcriptome quantification at the isoform-level using RNA-seq

All-new SAMMate 2.5 is released.

http://sammate.sourceforge.net/

New features:
RAEM-Read Assignment via EM (Deng et al. 2011, Nucleic Acids Research, doi: 10.1093/nar/gkr042)
One-step iQuant (isoform Quantification, manuscript in preparation)
Iterative iQuant (isoform Quantification, manuscript in preparation)
Output read counts for detecting differentially expressed genes and differentially expressed transcripts. e.g. using edgeR
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