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Old 08-18-2010, 02:31 AM   #1
Mona
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Location: Uppsala

Join Date: Feb 2010
Posts: 27
Default Errors using consed

Hi,
I have got a 454 data, and I have performed its denovo assembly. I am trying to perform gap closure using consed. When i run the consed and try to load the ace file, it loads the file but with the error: could not open phd file. ../phd dir/F33GYHM02GEz27.phd.1.
And secondly when i try to open the chromatogram of a particular read, it gives me error: Unable to find chromatogram file ../chromat_dir/sff:F33GYHM02.sff:"read name".
I have checked the installation and there isn't any problem with the installation, its working well with the test data and I have also checked my data on some other system where consed was running well. I dont know how to stop getting this message.
Any one please help.
Thanks
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Old 09-22-2010, 01:43 AM   #2
Markiyan
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Location: Cambridge

Join Date: Sep 2010
Posts: 115
Default Please use latest consed.

Which version of the consed you are using?

Please use version 19. This problem happens on the consed versions 16 and before.
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