Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Solicitations Regarding the Recent Upgrades to 120 tile format

    Hello.

    I am trying to get a sampling of peoples experiences concerning the recent "upgrades" on the GAII machines that incorporate the new reagent/cooling system. We have several machines which used to function marvelously. Since Illumina started sending people out to "upgrade" them they have never quite worked right. We see much worse map'ability on 2 x 76 human RNA-Seq libraries suggesting base calling issues, and the signals are dropping dramatically during the course of the runs. (They are not overloaded, 12 million clusters and v 1.4 software). In short, we got much better results when we had to use fresh reagents that we changed more frequently.

    We are inclined to think it is either mechanical or chemical in nature. I'm wondering if it has to do with the new cooling/reagent system that has recently been installed?

    What have other people's experiences with the upgrades been? Love 'em hate 'em?

  • #2
    Hello,

    You post caught our interest as we are about to upgrade our GAII machine. It's rather new as its only been functional for a few weeks. Can you share more details with us? For example, when you say:
    the signals are dropping dramatically during the course of the runs
    how many bases can you effectively use? 2x50?

    Thank you!
    L. Collado Torres, Ph.D. student in Biostatistics.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin


      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...
      Today, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    37 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    41 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    35 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    54 views
    0 likes
    Last Post seqadmin  
    Working...
    X