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Old 06-15-2009, 07:53 AM   #1
cmm8cmm8
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Default Small RNA Pipeline

I am running a small RNA project for the first time, and I am curious if anyone knows where I can get a multi-FASTA file containing the sequences to be removed during the filtering step (rRNA, tRNA, adaptor sequences). My project involves human samples.
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Old 06-15-2009, 08:57 PM   #2
Rao
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You will get them from NCBI databases, and adapter sequences ..get them from vendor...(may from some documentation)...
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Old 06-18-2009, 08:51 AM   #3
Sheila
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Hi,
The dataset for the smallRNA pipeline includes this file (human_filter_reference.fasta)
http://download.solidsoftwaretools.com/srna/data.tgz

Sheila
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