Have any of you tried the data of LSC paper?
I've downloaded brain data from http://www.stanford.edu/~kinfai/huma...m_PacBioLR.zip, and Illumina brain data from Human Body Map 2.0 GSE30611, and tried to reproduce the same result but I've got errors.
I wanted to make sure that I run LSC properly before I apply LSC to my data.
So, Here is my setting. LSC-0.2.2 with novoalign 2.07.10
I run example code from LSC website, successful, so I think all system setting should be good to go. I'm sure SR/LR dir and output, temp dir are correct. I failed in the middle of running
I've downloaded brain data from http://www.stanford.edu/~kinfai/huma...m_PacBioLR.zip, and Illumina brain data from Human Body Map 2.0 GSE30611, and tried to reproduce the same result but I've got errors.
I wanted to make sure that I run LSC properly before I apply LSC to my data.
So, Here is my setting. LSC-0.2.2 with novoalign 2.07.10
I run example code from LSC website, successful, so I think all system setting should be good to go. I'm sure SR/LR dir and output, temp dir are correct. I failed in the middle of running
Code:
Traceback (most recent call last): File "/my/path/LSC_0.2.2/bin/writetmp.py", line 92, in <module> LR_SR_mapping_file = open(LR_SR_mapping_filename_ext,'r') IOError: [Errno 2] No such file or directory: 'temp_brain/LR_SR.map.aa' 0:29:42.983824 rm: cannot remove `temp_brain/LR_SR.map.aa': No such file or directory rm: cannot remove `temp_brain/LR_SR.map.ab': No such file or directory rm: cannot remove `temp_brain/LR_SR.map.ac': No such file or directory rm: cannot remove `temp_brain/LR_SR.map.ad': No such file or directory rm: cannot remove `temp_brain/LR_SR.map.ae': No such file or directory
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