Hi all,
is there a way in IGV (or other viewer) to visualize the pair reads, displaying each pair couple in a single line? I want to see how the two reads of each pair are far/close to each other. By default, after I load the bam file, each read of a pair is aligned to the reference, but the two reads of the same pair are not on the same line. So, with thousands of reads, I can't understand how the reads of the same pair couple are mapped relatively to each other..
is there a way in IGV (or other viewer) to visualize the pair reads, displaying each pair couple in a single line? I want to see how the two reads of each pair are far/close to each other. By default, after I load the bam file, each read of a pair is aligned to the reference, but the two reads of the same pair are not on the same line. So, with thousands of reads, I can't understand how the reads of the same pair couple are mapped relatively to each other..
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