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Old 05-26-2011, 09:15 PM   #1
raw937
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Default CAP3 Assembler for Ubuntu 11.04

Does anyone have a clue how to get this program functional on the ubuntu 11.04?
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Old 05-26-2011, 09:39 PM   #2
natstreet
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All I did was download the 64bit version from here. What have you tried, what doesn't work for you?
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Old 05-26-2011, 09:44 PM   #3
raw937
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Default CAP3 unable to run on box...

It doesn't work on 11.04 ubuntu...


Have you tried it on that?

I have tried to extract it directly or un tar it...

The command isn't seen....

is their a sudo command?

I tried to ./configure, ./make and ./sudo make...

NO LUCK!!!!

WTF?
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Old 05-26-2011, 10:44 PM   #4
natstreet
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The download links at the address I posted will give you pre-compiled binaries.

Here are the commands I used

Code:
wget http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar

tar xf cap3.linux.i686_xeon64.tar

cd CAP3/

./cap3
You can then copy that binary to somewhere in your system path, for example

Code:
sudo cp cap3 /usr/local/bin/
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Old 05-27-2011, 09:36 AM   #5
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It works!!!

Thanks so much!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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assembly, cap3, de novo assembly, metagenomes

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