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Old 05-28-2015, 06:15 AM   #1
Location: Norway

Join Date: Jan 2010
Posts: 83
Default Difference between Cufflinks coverage and HTSeq-count


I am struggling to understand the coverage value (not fpkm) produced by cufflinks. In my case it seems to be much lower than the values produced by htseq-count. I thought the cufflinks coverage was the raw count? Anyone know the difference between this and the htseq-count output?

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cufflinks, fpkm, htseq-count, rna-seq

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