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Old 09-26-2015, 12:39 AM   #1
Saeideh
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Location: Iran

Join Date: Aug 2015
Posts: 25
Default The most expressed genes

Hi all~~

I have sequence reads of two samples (Each for one condition).

I used Cufflinks package to identify differential expression.

Now, I have to find the most expressed gene.
from https://www.biostars.org/p/114291/ I understood I should draw histogram by R (ggplot2? cummeRbund?)

As much as I look for commands tutorials on how to draw histogram, I cannot find helpful one. For example I know how to plot histogram with ggplot2 (I followed the manual) but I do not know how to tell ggplot2 to look for my data in cuffdiff outputs.

Would you please help me

Thanks in advance
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