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Old 12-07-2010, 12:23 AM   #1
semna
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Default gene name in cufdiif output?

Hi
I use the new version of cufflinks and I run simple cufflinks, then run cuffcompare with -r and finally run cuffdiff with -N and used combined gtf. but I don't have any gene name in my output? Thanks for your help in advance.
reza
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Old 12-07-2010, 12:43 AM   #2
Mark Admr
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Hi,
i don't know about it but i think you will get your desired help by searching social network.
You can try.
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Old 12-07-2010, 03:22 AM   #3
junshen
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Did you use a .gtf file?
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Old 12-07-2010, 03:41 AM   #4
semna
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yes, for cuffcompare used gtf file from ensembl and in cuffdiff used stdout.combined.gtf and two bam files.
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