SEQanswers

Go Back   SEQanswers > Applications Forums > Epigenetics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data fkrueger Bioinformatics 649 10-05-2018 02:43 AM
update on bisulfite mapping program: BSMAP-2.4 yxibcm Bioinformatics 4 05-03-2016 06:57 AM
PubMed: Sequence-based physical mapping of complex genomes by whole genome profiling. Newsbot! Literature Watch 0 07-14-2011 03:00 AM
whole genome Bisulfite Sequence MAPping program wei Bioinformatics 0 08-07-2009 03:46 PM
SOCS: Efficient mapping of Applied Biosystems SOLiD sequence data to a ref genome... ECO Literature Watch 0 10-20-2008 08:53 PM

Reply
 
Thread Tools
Old 08-07-2009, 03:50 PM   #1
wei
Junior Member
 
Location: Houston, TX

Join Date: Aug 2009
Posts: 4
Default BSMAP: whole genome Bisulfite Sequence MAPping program

Hi folks,

BSMAP: whole genome Bisulfite Sequence MAPping program
http://www.biomedcentral.com/1471-2105/10/232
wei is offline   Reply With Quote
Old 09-21-2009, 08:19 AM   #2
VanAxel
Junior Member
 
Location: germany

Join Date: Apr 2009
Posts: 3
Default

@Wei: Will your BSMAP support SOLiD data input in the future?

Best regards
Axel
VanAxel is offline   Reply With Quote
Old 09-21-2009, 10:28 AM   #3
krobison
Senior Member
 
Location: Boston area

Join Date: Nov 2007
Posts: 747
Default

It would be great if you'd create an entry in the software wiki for your program
http://seqanswers.com/wiki/Software
krobison is offline   Reply With Quote
Old 03-20-2014, 11:27 AM   #4
lwhitmore
Member
 
Location: washington

Join Date: Aug 2013
Posts: 70
Default example BSMAP alignment file

Is any one aware of where I can get an example BSMAP Alignment file??
lwhitmore is offline   Reply With Quote
Old 03-20-2014, 02:13 PM   #5
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
Default

If you want the SAM variant (it also has its own output format), just PM me with your email address and I can send you a small example.
dpryan is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 10:08 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO