Dear All,
When I practiced bisulfite sequencing mapping program (Bismark and BSSeeker) with Lister's H1 dataset (http://neomorph.salk.edu/human_methylome/data.html), I found that several repetitive regions can't be mapped (e.g. chr6:29630000-29720000). However, on Lister's AnnoJ Browser, this regions mapped well by using their approach (http://neomorph.salk.edu/human_methylome/browser.html).
Therefore, I would like to ask if anyone had this problem before? And how to fix it?
When I practiced bisulfite sequencing mapping program (Bismark and BSSeeker) with Lister's H1 dataset (http://neomorph.salk.edu/human_methylome/data.html), I found that several repetitive regions can't be mapped (e.g. chr6:29630000-29720000). However, on Lister's AnnoJ Browser, this regions mapped well by using their approach (http://neomorph.salk.edu/human_methylome/browser.html).
Therefore, I would like to ask if anyone had this problem before? And how to fix it?
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