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  • BRCA sub type information in TCGA

    Hi,
    I am looking for the Breast Cancer molecular subtype information in TCGA.
    I searched in the clinical data files, but i havnt found it there.
    What I found is "stageing" and the "pharmaceutical_therapy_drug_name" per "patient".

    Is there a file that contain the molecular subtype information?
    (Luminal A,Luminal B,Triple negative/basal-like,HER2 type)

    Thanks,
    Pap

  • #2
    817 of them are in the supplement of a recent Cell paper. (Supplemental Table 1)

    This is for the RNAseq data.

    @Pap: If you need the calls for the full RNAseq subset then send me a PM.

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