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Hi everyone,
I am trying to run MSG (multiplexed shotgun genotyping) but I am getting a strange error in qsub:
qsub: script file 'n' cannot be loaded - No such file or directory
Error in qsub -N msgRunU0-1.7410 -cwd -b y -V -sync n ./msgRunU0-1.sh
It seems that the computer isn't recognizing 'n' as an argument of -sync, but rather its own parameter as a script file. I tried changing the argument to 'y' in all the associated scripts for the program, as well as deleting the whole "-sync n" option, but I still get the same error that "script file 'n' cannot be loaded."
I am entirely unfamiliar with SGE so I dont know whats going on. Does one of the previous parameters need another argument? Why do I still get the error for 'n' after Ive taken out all the 'n's?
Thanks in advance!
I am trying to run MSG (multiplexed shotgun genotyping) but I am getting a strange error in qsub:
qsub: script file 'n' cannot be loaded - No such file or directory
Error in qsub -N msgRunU0-1.7410 -cwd -b y -V -sync n ./msgRunU0-1.sh
It seems that the computer isn't recognizing 'n' as an argument of -sync, but rather its own parameter as a script file. I tried changing the argument to 'y' in all the associated scripts for the program, as well as deleting the whole "-sync n" option, but I still get the same error that "script file 'n' cannot be loaded."
I am entirely unfamiliar with SGE so I dont know whats going on. Does one of the previous parameters need another argument? Why do I still get the error for 'n' after Ive taken out all the 'n's?
Thanks in advance!