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  • Glimmer3

    Hey there,

    I am currently using the newest version of Glimmer, Glimmer3.02. When running the g3-iterated-viral.csh script I get the "Failed to run Glimmer3" error at step 8 (glimmer3 also runs at step 4 and it worked just fine). The terminal reads "Segmentation fault (core dumped)". More specifically:

    .
    .
    .Analyzing Sequence #9046
    Start Find_Orfs
    Start Score_Orfs
    Start Process_Events
    Start Trace_Back
    Analyzing Sequence #9047
    Start Find_Orfs
    Start Score_Orfs
    Segmentation fault (core dumped)

    Some people suggest this has something to with glimmer3 not being able to access some memory (like a permission thing? this is unlikely because everything has rw permissions in my directory).... I'm sort of just lost at this point and am posting everywhere asking for help. Please help!!!!

  • #2
    Core dump shows:

    Program terminated with signal 11, Segmentation fault.
    #0 0x000000000041fd5e in Complement (ch=-48 '\320') at gene.cc:531

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