We just posted version 2.19.0 of bedtools. The intersect tool is ~5x faster than in 2.17, and the map tool is ~3x faster. Multiple bugs fixes and new functionality.
Details of the release: https://groups.google.com/forum/#!to...ss/UJpo5JJO38M
Also, please note that:
1. bedtools downloads are now found on Github (not Google Code):
2. We have a fairly new documentation site:
Details of the release: https://groups.google.com/forum/#!to...ss/UJpo5JJO38M
Also, please note that:
1. bedtools downloads are now found on Github (not Google Code):
2. We have a fairly new documentation site: