I have problems getting fasta from PacBio SRA file using SRA toolkit. For example, file SRR2003880.sra should contain about 163K sequences, it yields only 46K and those do not correspond to the same names on NCBI SRA website. I can successfully process other PacBio files, and I am using the newest version of SRA toolkit with the following command line:
sratoolkit.2.4.5-2-win64/bin/fastq-dump.exe --fasta SRR2003880.sra
My best guess is that the upload of the data on NCBI SRA website was incorrect. They did not answer me yet. I would very appreciate anybody's help or opinion.
Thank you.
sratoolkit.2.4.5-2-win64/bin/fastq-dump.exe --fasta SRR2003880.sra
My best guess is that the upload of the data on NCBI SRA website was incorrect. They did not answer me yet. I would very appreciate anybody's help or opinion.
Thank you.
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