Hi,
I am using GATK to adjust my per base quality scores in a .bam file. Does anyone know how to download a dbSNP v132 .rod file in order to exclude already known variants so they are not interpreted as mismatches?
Also, can anyone recommend covariates to use in the CountCovariates analysis?
Thanks
Kath
I am using GATK to adjust my per base quality scores in a .bam file. Does anyone know how to download a dbSNP v132 .rod file in order to exclude already known variants so they are not interpreted as mismatches?
Also, can anyone recommend covariates to use in the CountCovariates analysis?
Thanks
Kath
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