We want to track the run to run performance metrics for our MiSeq. We currently use Sequence Analysis Viewer to obtain post-run metrics such as cluster density, pass filter, total reads, etc. We do this by looking at the Summary tab on SAV and manually typing these values into an Excel spreadsheet.
I would like to know if there is a better way to record these values such as exporting them from SAV as a .csv file or using a script to access the data directly from the run output folder. I believe these stats are buried within the .bin files in the InterOps folder but they are not user accessible. Illumina says they cannot help me on this one.
Any suggestions would be appreciated. Thanks
I would like to know if there is a better way to record these values such as exporting them from SAV as a .csv file or using a script to access the data directly from the run output folder. I believe these stats are buried within the .bin files in the InterOps folder but they are not user accessible. Illumina says they cannot help me on this one.
Any suggestions would be appreciated. Thanks
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