Helllo everyone,
I am still comfused how to set the maximum mismatch to 2 when I use "bwa aln", given 75bp reads.
bwa aln -n 2
or
bwa -l 75 -k 2
Any suggestions will be highly appreciated
I am still comfused how to set the maximum mismatch to 2 when I use "bwa aln", given 75bp reads.
bwa aln -n 2
or
bwa -l 75 -k 2
Any suggestions will be highly appreciated
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