Hi everybody,
I've managed to get SMRT Pipe running on my 2 core notebook (64bit, 8 GB RAM, Ubuntu 14), but when I start a job, they all exit after some seconds with errors (smrtpipe.log) like:
"SmrtExit task://Anonymous/P_Filter/filter.plsFofn.Scatter Failed" (P_Filter)
or
"Failed to resolve Workflow tasks (Workflow.resolve)
Unable to satisfy OR clause in task inpt definition for task://jobId/P_Mapping/align:
file://jobId/data/post_control_regions.fofn,file://jobId/data/filtered_regions.fofn,file://jobId/input.fofn" (P_Mapping)
My first thought was SMRT Pipe wants to do job distribution. (I set job management system to 'None' during installation)
I've looked inside the web.xml file, but the "jobsAreDistributed" parameter is set to 'false'.
Has anyone experienced similar secondary analysis problems? Could it be that a single notebook is simply not powerful enough to perform a P_Filter task?
I just want to do single jobs on a small bacterial genome with a more powerful desktop PC.
I've managed to get SMRT Pipe running on my 2 core notebook (64bit, 8 GB RAM, Ubuntu 14), but when I start a job, they all exit after some seconds with errors (smrtpipe.log) like:
"SmrtExit task://Anonymous/P_Filter/filter.plsFofn.Scatter Failed" (P_Filter)
or
"Failed to resolve Workflow tasks (Workflow.resolve)
Unable to satisfy OR clause in task inpt definition for task://jobId/P_Mapping/align:
file://jobId/data/post_control_regions.fofn,file://jobId/data/filtered_regions.fofn,file://jobId/input.fofn" (P_Mapping)
My first thought was SMRT Pipe wants to do job distribution. (I set job management system to 'None' during installation)
I've looked inside the web.xml file, but the "jobsAreDistributed" parameter is set to 'false'.
Has anyone experienced similar secondary analysis problems? Could it be that a single notebook is simply not powerful enough to perform a P_Filter task?
I just want to do single jobs on a small bacterial genome with a more powerful desktop PC.
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