tophat 1.2 multi thread mode error

altodor · 01-26-2011, 12:04 PM

Hi all,
running tophat 1.2 with 8 threads the following errors occur

srun: error: q44: tasks 0-6: Exited with exit code 1
And one thread continues running.

Also it seems like there is a conflict between threads in creating outputdirectory:
:
[Wed Jan 26 21:17:51 2011] Preparing output location tophat_04/
Traceback (most recent call last):
File "/soft/tophat-1.2.0/tophat", line 2347, in ?
sys.exit(main())

OSError: [Errno 17] File exists: '/tophat_04/'
os.mkdir(output_dir)
File "/soft/tophat-1.2.0/tophat", line 2230, in main
sys.exit(main())

Have anyone got the same problems?

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01-26-2011, 12:04 PM	#1
altodor Member Location: Sweden Join Date: Nov 2009 Posts: 12	tophat 1.2 multi thread mode error Hi all, running tophat 1.2 with 8 threads the following errors occur srun: error: q44: tasks 0-6: Exited with exit code 1 And one thread continues running. Also it seems like there is a conflict between threads in creating outputdirectory: : [Wed Jan 26 21:17:51 2011] Preparing output location tophat_04/ Traceback (most recent call last): File "/soft/tophat-1.2.0/tophat", line 2347, in ? sys.exit(main()) OSError: [Errno 17] File exists: '/tophat_04/' os.mkdir(output_dir) File "/soft/tophat-1.2.0/tophat", line 2230, in main sys.exit(main()) Have anyone got the same problems? Last edited by altodor; 01-27-2011 at 12:23 AM.