Go Back   SEQanswers > Bioinformatics > Bioinformatics
Similar Threads
Thread Thread Starter Forum Replies Last Post
Compare results from different aligners (SAM files) guykol Bioinformatics 4 04-11-2012 12:42 PM
Filter out reads with several variants david.tamborero Bioinformatics 0 01-25-2012 08:31 AM
using filter in Samtools emilyjia2000 Bioinformatics 1 08-01-2011 01:50 PM
DGE - filter or not filter masterpiece Bioinformatics 0 07-11-2011 08:55 PM
How to filter rRNA reads in SAM file. townway Bioinformatics 3 07-15-2010 07:54 AM

Thread Tools
Old 05-24-2011, 11:07 PM   #1
rafi bondi
Junior Member
Location: israel

Join Date: Nov 2010
Posts: 9
Default filter sam results

I've used bwa to map a pair dent fastq files to a small part of the genome (5000 bp), but i get a very big SAM file (2.5Gb). Is there a way to remove from the sam file the parts that weren't aligned?
do i have to use the location of the gene in the genome?
rafi bondi is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:37 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2022, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO