where can get help information about ALLPATHS

anyone1985 · 03-28-2009, 08:10 PM

I have download the source code of the ALLPATHS from the MIT. But I can not find any information about how to compile or install. Where can I get the information about how to install and use?

Torst · 04-05-2009, 02:31 PM

The manual seems to be a separate download to the .tgz package:

ftp://ftp.broad.mit.edu/pub/crd/ALLP....0.manual.docx

anyone1985 · 04-09-2009, 07:26 PM

/usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/backward/auto_ptr.h:196
./kmer_freq/EvaluateStrongKmers.cc:302:

when I compile the software, it report a bug. The above files seem to be something wrong.

anyone1985 · 04-09-2009, 08:32 PM

I think I solve the problem after I change the system language from Chinese to English.

Himalaya · 07-10-2010, 12:54 PM

Quote:

Originally Posted by anyone1985

I think I solve the problem after I change the system language from Chinese to English.

Hi anyone1985
Are you running AllPaths? Does it work? What version are you using? I tried with version 3.3.2 and i always get error that says -

Looks like the command PrepareAllPathsInput did not complete

Did you get this error?
What command do you give for TARGET=import and TARGET=Standard

thanks in advance
himalaya

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03-28-2009, 08:10 PM	#1
anyone1985 Member Location: shanghai, chia Join Date: Mar 2009 Posts: 67	where can get help information about ALLPATHS I have download the source code of the ALLPATHS from the MIT. But I can not find any information about how to compile or install. Where can I get the information about how to install and use?

04-05-2009, 02:31 PM	#2
Torst Senior Member Location: The University of Melbourne, AUSTRALIA Join Date: Apr 2008 Posts: 275	The manual seems to be a separate download to the .tgz package: ftp://ftp.broad.mit.edu/pub/crd/ALLP....0.manual.docx Last edited by Torst; 04-05-2009 at 02:40 PM. Reason: Found better information for answer.

04-09-2009, 07:26 PM	#3
anyone1985 Member Location: shanghai, chia Join Date: Mar 2009 Posts: 67	/usr/lib/gcc/x86_64-redhat-linux/4.3.2/../../../../include/c++/4.3.2/backward/auto_ptr.h:196 ./kmer_freq/EvaluateStrongKmers.cc:302: when I compile the software, it report a bug. The above files seem to be something wrong.

04-09-2009, 08:32 PM	#4
anyone1985 Member Location: shanghai, chia Join Date: Mar 2009 Posts: 67	I think I solve the problem after I change the system language from Chinese to English.