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Old 07-18-2012, 11:29 AM   #1
shuang
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Location: IL

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Default promoter sequence analysis

I have about 100 promoter/5'UTR sequences. I would like to find out if any special motifs or TF biding sites among them. They are from Sorghum.

What would be a good tool or website for my purpose?
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Old 07-18-2012, 11:51 PM   #2
dariober
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Quote:
Originally Posted by shuang View Post
I have about 100 promoter/5'UTR sequences. I would like to find out if any special motifs or TF biding sites among them. They are from Sorghum.

What would be a good tool or website for my purpose?
What about MEME? http://meme.sdsc.edu/meme/intro.html
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