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02-16-2010, 07:29 AM
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Member
Location: Taiwan Join Date: Jan 2010
Posts: 17
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Tophat and Bowtie
I know that Tophat would call bowtie to form fasta(*.fa) files as references.
And I use the command as follows: ./tophat -r 5 -p 12 chr22 ../TestData/s_1_1_seq.txt ../TestData/s_1_2_seq.txt All the process is running well, but I figure out that tophat would call bowtie. However, I already have chr22.fa in the current folder. And I also have chr22.*.ebwt files in the current folder. What's wrong? What is bowtie doing now? Thanks. |
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