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Old 06-29-2015, 05:31 AM   #1
Junior Member
Location: USA

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Default Obtain a bed file with the name of gene


I have a gene of interest. How can I obtain the bed file for the particular gene. I tried it on UCSC. Is there an alternate way? Is there an efficient way to automate this process if I have many genes of interest. If this question has been asked before, kindly point me to that direction.

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Old 06-29-2015, 09:22 AM   #2
Devon Ryan
Location: Freiburg, Germany

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You could also use biomart, which provides a number of programmatic interfaces. BTW, UCSC can also be accessed via SQL, which is often convenient in cases like this.
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Old 06-29-2015, 05:13 PM   #3
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@biomitty: Did you try table browser for this or some other way?
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Old 06-29-2015, 07:21 PM   #4
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Hi, for bioinformatics related questions. I think it's a good idea to ask those companies who provide bioinformatics service; Ie. Creative BioMart. Good luck!
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ucsc genome browser

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