Allpaths installation and usage

bioinfosm · 07-28-2008, 01:22 PM

Hi,

Anyone tried allpaths from Broad? I just wanted some idea on how usable it is and how efficiently it works on Solexa data.

sm

mchaisso · 07-28-2008, 02:50 PM

A postdoc in my lab was attempting to try it. One consideration is that you need two different clone libraries for it to work: one small insert and one large.

-mark

bioinfosm · 07-29-2008, 08:42 AM

Quote:

Originally Posted by mchaisso

A postdoc in my lab was attempting to try it. One consideration is that you need two different clone libraries for it to work: one small insert and one large.

-mark

Thanks Mark.

I didnt know that Allpaths is limited to paired end data..

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07-28-2008, 01:22 PM	#1
bioinfosm Senior Member Location: USA Join Date: Jan 2008 Posts: 482	Allpaths installation and usage Hi, Anyone tried allpaths from Broad? I just wanted some idea on how usable it is and how efficiently it works on Solexa data. sm

07-28-2008, 02:50 PM	#2
mchaisso Member Location: Seattle, WA Join Date: Apr 2008 Posts: 84	A postdoc in my lab was attempting to try it. One consideration is that you need two different clone libraries for it to work: one small insert and one large. -mark