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Old 07-13-2010, 09:51 AM   #1
Junior Member
Location: Vancouver

Join Date: Oct 2009
Posts: 4
Default runAssembly error

Hi all,

I am running a cdna assembly with runAssembly (ver 2.3) and got the following error during the building of the contigs/isotigs stage:

Error: An internal error has occurred in the computation.
Assertion: chordId >= 0 && chordId < numChords
Location: 'Chord* ChordCache::getChord(int)' [ChordCache.h:44]
Please report this error to your customer support representative.

The assembly involves paired-end Sanger reads together with some Titaniums reads. Anyone knows about this error and way to get around it? Thanks.
mack is offline   Reply With Quote
Old 07-14-2010, 07:18 AM   #2
Location: Oslo, Norway

Join Date: Nov 2008
Posts: 415

These cryptic messages happen sometimes and indicate a bug in newbler. I guess you're stuck with following the instructions and contacting your local Roche rep...
flxlex is offline   Reply With Quote

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