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Old 03-18-2013, 01:20 PM   #1
kvk727
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Location: Oregon, USA

Join Date: Jan 2013
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Default Sorting DESeq results

Hi All,
I would like to sort my DESeq (or edgeR) results based on different classes of genes (ie, call out all transcription factors represented in my differentially expressed resSig file). Does anyone know a way to do this?

Furthermore, is it possible to plot these different groups of genes in different colors in the plotMA or plotPCA commands?

Thanks so much in advance for the help, it is greatly appreciated!
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