From the documentation I can only find how to select a certain type of feature for counting, like "exon" (default) or "ncRNA".
Is there also a way to select multiple features?
I'm using it currently for bacterial transcriptomics and ncRNA are of increasing importance here. Currently, I still need to run the script twice on different features and merge the results afterwards.
While this actually works fine, it would be simpler to just tell htseq-count to look for multiple features at the same time.
Any hints on how to do this?
Is there also a way to select multiple features?
I'm using it currently for bacterial transcriptomics and ncRNA are of increasing importance here. Currently, I still need to run the script twice on different features and merge the results afterwards.
While this actually works fine, it would be simpler to just tell htseq-count to look for multiple features at the same time.
Any hints on how to do this?
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