I want to use Prokka to annotate a Velvet alignment of a Pseudomonas aeruginosa genome. When I try to run it I get this error:
Contig ID must <= 20 chars long: NODE_1_length_41061_cov_17.678381
[11:20:10] Please rename your contigs or use --centre XXX to generate clean contig names.
So I inserted the --centre XXX command in the running command. But now I become this error:
Contig ID must <= 20 chars long: gnl|XXX|PROKKA_contig000001
[11:22:08] Please rename your contigs or use --centre XXX to generate clean contig names.
So what do i do now? Is there a way to get the name shorter?
I appreciate any help
Contig ID must <= 20 chars long: NODE_1_length_41061_cov_17.678381
[11:20:10] Please rename your contigs or use --centre XXX to generate clean contig names.
So I inserted the --centre XXX command in the running command. But now I become this error:
Contig ID must <= 20 chars long: gnl|XXX|PROKKA_contig000001
[11:22:08] Please rename your contigs or use --centre XXX to generate clean contig names.
So what do i do now? Is there a way to get the name shorter?
I appreciate any help
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