Hello,
I´m currently working on paired end data (2*150) to build a metagenomics assembly.
So far i´m using the combination of megahit to build contigs and soapdenovo for scaffolding. soapdenovo is not mainained anymore.
Does anybody worked with other scaffolding tools ??? SSpace seem to do the job but it´s not opensource.
thanks for sharing your experience.
david
I´m currently working on paired end data (2*150) to build a metagenomics assembly.
So far i´m using the combination of megahit to build contigs and soapdenovo for scaffolding. soapdenovo is not mainained anymore.
Does anybody worked with other scaffolding tools ??? SSpace seem to do the job but it´s not opensource.
thanks for sharing your experience.
david
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