Does anyone use the RNAmmer software to scan genome to find rRNA?
I have already edited the path of rnammer file including the path to hmmsearch.
However, when I run it like this on sample data:
perl rnammer -S bac -m lsu,ssu,tsu -gff test.gff -xml test.xml -h test_respot.txt example/ecoli.fsa
I got no result in the test.gff file.
Can anyone give me some suggestions? I have tried to ask in the official email address, but no one reply me?
Thanks!
Jingjing
I have already edited the path of rnammer file including the path to hmmsearch.
However, when I run it like this on sample data:
perl rnammer -S bac -m lsu,ssu,tsu -gff test.gff -xml test.xml -h test_respot.txt example/ecoli.fsa
I got no result in the test.gff file.
Can anyone give me some suggestions? I have tried to ask in the official email address, but no one reply me?
Thanks!
Jingjing
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