Hello,
Does anyone know how to set the parameters to align the reads with no more than 2 mismatches in bowtie2?
In Bowtie, the command line (-v is the parameter) is like the following:
>Bowtie ref -a -v 2 -f read.fa output.sam
How to record all the reads with no more than 2 mismatches in Bowtie2?
Thanks,
Yanju
Does anyone know how to set the parameters to align the reads with no more than 2 mismatches in bowtie2?
In Bowtie, the command line (-v is the parameter) is like the following:
>Bowtie ref -a -v 2 -f read.fa output.sam
How to record all the reads with no more than 2 mismatches in Bowtie2?
Thanks,
Yanju
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