Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
HTSeq sort sam DZhang Bioinformatics 41 11-03-2014 12:36 AM
Trouble with HTSeq install austinpa Bioinformatics 13 07-22-2013 02:58 PM
Problem using HTSeq pinki999 Bioinformatics 4 10-23-2012 10:40 PM
help with HTSeq installation madhuk11 Bioinformatics 4 06-07-2012 11:04 AM

Thread Tools
Old 06-29-2011, 06:38 AM   #1
Location: na

Join Date: Jun 2010
Posts: 15
Smile in HTSeq example, pyplot

Hi All,

I am trying to run HTSeq with my data set and am using a script shown in HTSeq web site as a simple example. but just got error message in pyplot function in python. i am a very beginner of python.
is there anyone who ran this example successfully and can advise me what i am missing now here?

Thanx a lot in advance!

>>> from matplotlib import pyplot
>>> #import _tkagg
... #import Tkinter as Tk
>>> pyplot.plot(qualsum/nreads)
[<matplotlib.lines.Line2D object at 0x2f69cd0>]
Exception in Tkinter callback
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk/", line 1410, in __call__
return self.func(*args)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/backends/", line 245, in resize
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/backends/", line 249, in draw
tkagg.blit(self._tkphoto, self.renderer._renderer, colormode=2)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/matplotlib/backends/", line 19, in blit"PyAggImagePhoto", photoimage, id(aggimage), colormode, id(bbox_array))

hibachings2013 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:41 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO