Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
not able to load a bed file into UCSC genome browser ataaillah Introductions 0 01-18-2012 08:46 AM
BAM file to Histogram on UCSC Genome Browser qnc Bioinformatics 3 10-14-2011 07:11 AM
Galaxy vs. UCSC Genome Browser Table Queries? jnfass Bioinformatics 2 09-02-2010 11:56 AM
wig file for genome browser baohua100 Bioinformatics 4 07-30-2009 07:39 AM
FindPeaks 3.1.3 (alpha) - ChIP-Seq and UCSC-compatible short-read wig track creator apfejes Bioinformatics 4 05-27-2008 12:44 PM

Thread Tools
Old 02-18-2013, 08:57 PM   #1
Galaxy user
Junior Member
Location: Canada

Join Date: Feb 2013
Posts: 1
Post Galaxy-ChIP-seq analysis: UCSC Genome browser can't read the wig file.

Hello guys,

I am using the Galaxy web tool to analyze ChIP-seq data. By applying MACS algorithm, the Galaxy browser generated bed and wig files. Within the Galaxy browser, the bed file has a link to the UCSC Genome browser, whereas the wig file has no link to the UCSC browser. I wonder which file is best to visualize the peaks in the UCSC Genome browser and how? Any experience or just thoughts?

Thank you in advance!
Galaxy user is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:03 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO