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I would like to identify each read of a smallRNAseq with a given genomic feature (e.g., exon, intron, repeat). I tried to use the BED to GFF tool in galaxy, and instead of a feature, I was given back the sequence of the interval for each BED entry. Does anyone have any alternative ways to do this?
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This question is being discussed on the Galaxy-user mailing list. -
thanks...
but I am the same person that started that thread. I doubt the overlap between the two is 100% and figured it was quite small. All apologies for the redundancy.Comment
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For future reference, you could include a link to any other mailing list so that people here on SeqAnswers are aware of the other potential solutions, and post back on the thread if you get a solution from the mailing list.Comment
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