Hi,
I have some data that I know was generated using SOLiD, but I don't recognize the format. It looks almost like a colorspace fastq file, but not quite, like this:
The first line is apparently
>(bead-info),(chr)_[- if on neg strand](coordinate, Mm 9).(#mismatches),[Quality_score]
Can anyone tell me what format this is and how I can convert it to typical fastq format?
Thanks!!
I have some data that I know was generated using SOLiD, but I don't recognize the format. It looks almost like a colorspace fastq file, but not quite, like this:
>1739_884_912_F3,2_-11523929.1,13.34
T32202001123212121221020202001222022
>1791_1330_1088_F3,3_-46239737.1,17.29
T03213011011311212110322211030010033
>465_1064_1221_F3,9_86102047.0,20.91
T30122123101011101201231020122131323
>2275_505_1405_F3,1_-98592059.3,16.34
T20220110202103221120011021100003000
>1886_592_994_F3,9_116983194.2,18.91
T13100232120223122002121002000120233
T32202001123212121221020202001222022
>1791_1330_1088_F3,3_-46239737.1,17.29
T03213011011311212110322211030010033
>465_1064_1221_F3,9_86102047.0,20.91
T30122123101011101201231020122131323
>2275_505_1405_F3,1_-98592059.3,16.34
T20220110202103221120011021100003000
>1886_592_994_F3,9_116983194.2,18.91
T13100232120223122002121002000120233
The first line is apparently
>(bead-info),(chr)_[- if on neg strand](coordinate, Mm 9).(#mismatches),[Quality_score]
Can anyone tell me what format this is and how I can convert it to typical fastq format?
Thanks!!
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