Hi All,
I have a set of sequences for genes promoters. To study the regulation mechanisms beyond these genes, I am trying to find motifs for TF binding in these promoter sequences.
However, it is known the GC content strongly affects the occurrence of motifs in promoters.
So, I want to know what is the best tool for GC analysis (so, I can apply it to analyze the GC content in the promoters and/or around TSS positions).
I have a set of sequences for genes promoters. To study the regulation mechanisms beyond these genes, I am trying to find motifs for TF binding in these promoter sequences.
However, it is known the GC content strongly affects the occurrence of motifs in promoters.
So, I want to know what is the best tool for GC analysis (so, I can apply it to analyze the GC content in the promoters and/or around TSS positions).
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