Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
Variant Effect Predictor API, dbSNP annotation dimo Bioinformatics 0 11-16-2016 07:03 PM
Using DbSnp annotation for mm9 model in Annovar? himanshu04 Bioinformatics 1 07-09-2014 12:29 PM
database snpeff vs dbsnp in variant annotation bongbimit Bioinformatics 0 04-05-2014 11:40 PM
Annotation with dbSNP tahamasoodi Bioinformatics 1 12-04-2013 09:12 PM
dbSNP updates and the effect on variant annotation results warrenemmett Bioinformatics 0 10-18-2011 01:31 PM

Thread Tools
Old 01-01-2018, 11:10 PM   #1
Junior Member
Location: London

Join Date: Jan 2018
Posts: 2
Default clarification of annotation columns in dbSNP

Hello every one. I would be very grateful if someone could help me with the following questions regarding SNPs.

I have two SNPs one in BRCA1 (rs56158747) and one in BRCA2 (rs206076). see attached files.

For rs56158747 the columns [SNP to Chr is Rev], [Contig to Chr is Fwd], [Contig allele is G], [SNP to RefSeqGene is Fwd] and [SNP to mRNA is Fwd]. However these columns are different for SNP in BRCA2.

I read the help from dbSNP to understand what these columns mean but got more confused. Can someone explain them to me. Please note that BRCA1 is located in the opposite direction than the BRCA2. Thank you very much!
fabbaszadeh is offline   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:03 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO