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Old 07-18-2016, 08:02 PM   #1
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Location: Kentucky, USA

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Default Distribution of multi-mapped reads


I want to compute the distribution of multi-mapped reads in BWA BAM file. Namely, I want to know the number of times each multi-mapped read appear in the bam file. This can be then used to construct a table like this:

<=10 times #reads
>10 & <20 #reads
and so on ..

I am not sure how to do that. Can anyone try to help?. Thank you.

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