Is it possible to obtain the mapping percent from .fastq file?
If I do the following:
grep "@HISEQ" -c file.fastq
I believe I obtain the number of sequences. Can this be used to determine the mapping rate without needing a .bam or .sam file?
If I do the following:
grep "@HISEQ" -c file.fastq
I believe I obtain the number of sequences. Can this be used to determine the mapping rate without needing a .bam or .sam file?
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