I've just started working with RNA seq data and what I found is a wide range of RPKM values. The problem is that I don´t know which is the best way to set up theshold to get rid of the "background noise". In some papers this thershold is around 0.3 RPKM but is not clrearly explained and it is higly dependent on you experiment (I asume).
I will be glad if anybody could help me!
Thanks in advance
I will be glad if anybody could help me!
Thanks in advance
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