I have a cancer bam file and want to check its read qualities. I have two options in mind.
1. Check bam quality through fastqc
2. Convert the bam file into paired-end reads (in fastq) and check their quality in fastqc.
Are both the processes equivalent?
1. Check bam quality through fastqc
2. Convert the bam file into paired-end reads (in fastq) and check their quality in fastqc.
Are both the processes equivalent?
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