gene fusion question

statsteam · 08-23-2013, 02:03 PM

Dear all,

I am new to the gene fusion field and I would like to ask a basic question.

What is a good and easy program to use to detect gene fusion form RNA-Seq data?

Thank you in advance,
-Statsteam

matrix731 · 08-25-2013, 06:20 PM

Maybe you can try SOAPfuse:

Quote:

Jia W, Qiu K, He M, et al. SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data[J]. Genome biology, 2013, 14(2): R12.

and download from here http://soap.genomics.org.cn/soapfuse.html

statsteam · 08-26-2013, 09:40 AM

Thanks a lot! By the way, it seems that SOAPfuse requires paired-end reads while the reads I have is single-end. Any other tools for this purpose?

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08-23-2013, 02:03 PM	#1
statsteam Member Location: Californica Join Date: Sep 2009 Posts: 19	gene fusion question Dear all, I am new to the gene fusion field and I would like to ask a basic question. What is a good and easy program to use to detect gene fusion form RNA-Seq data? Thank you in advance, -Statsteam

08-26-2013, 09:40 AM	#3
statsteam Member Location: Californica Join Date: Sep 2009 Posts: 19	Thanks a lot! By the way, it seems that SOAPfuse requires paired-end reads while the reads I have is single-end. Any other tools for this purpose?